Adam Szpiro

Sep 3, 2024 | genomebiology.biomedcentral.com | Brennan H. Baker |Sheela Sathyanarayana |Adam Szpiro |James MacDonald |James Macdonald |Alison G. Paquette

A graphical overview of the RNAseqCovarImpute MI PCA method is shown in Fig. 1, and the corresponding R code are available on GitHub and Bioconductor (see Availability of data and materials). A common filtering cutoff in RNA-sequencing is around 10 counts per gene, and filtering on log-counts per million (logCPM) values rather than raw counts is recommended to avoid giving preference to samples with large library sizes [45, 46].