Benjamin D. Greenbaum

Mar 4, 2024 | ias.edu | Benjamin D. Greenbaum

The Fred Hutchinson Cancer Center has announced the recipients of its 2024 Harold M. Weintraub Graduate Student Award, which recognizes exceptional achievement in graduate studies in the biological sciences. Among the twelve honorees was Karl H. Palmquist, Martin A. and Helen Chooljian Member in Biology in the School of Natural Sciences.

Dec 7, 2023 | dx.doi.org | Benjamin D. Greenbaum

Trade-offs inside the black box of neoantigen prediction: Immunity

Nov 14, 2023 | cell.com | Benjamin D. Greenbaum

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Jul 20, 2023 | nature.com | Nicole Rusk |Andrew Chow |Benjamin D. Greenbaum |Sohrab P. Shah

Dataset preprocessingEach single cell RNA-seq dataset in this study was processed using the Scanpy python library7. All highly variable gene selection was performed using the Seurat V36 method implemented in Scanpy. We performed cell type classification on 23,764 cells from the Tumor Immune Cell Atlas (TICA)20 using raw read counts from 2,000 highly variable after removal of non-protein coding genes.