Laboratório de Bioinformática

Oct 6, 2023 | parasitesandvectors.biomedcentral.com | Laboratório de Bioinformática |Johns Hopkins |Departamento de Microbiología |Bioinformatics Group

Each genome was assembled following a reference-based strategy. To that end, the reads from each sample were trimmed by quality. Phred quality scores before trimming were greater than Q30 (Additional file 1: Table S1) for all samples. Quality-trimmed reads from the Peruvian and Mexican isolates were then mapped against the Chinese reference. This resulted in 1,317,941 mapped reads from Puno (7811× coverage), 5561 from Huancayo (42×), and 674,666 from Mexico (3395×).