Li-Ting Ku

Dec 18, 2023 | genomebiology.biomedcentral.com | Biqing Zhu |Yuge Wang |Le Fu Zhang |Hongyu Zhao |Li-Ting Ku

scTCR-seq data in the filtered_contig_annotations.csv files were collected from the two data sources as described in the manuscript. Only T cells with \(\alpha\) and \(\beta\) chains were kept and we further chose cells with both RNA and paired TCR data. scRNA-seq data were processed in accordance with the scanpy [49] (v1.7.2, RRID:SCR_018139) workflow for preprocessing. Next, ResPAN [10] (v0.1.0) was applied to remove batch effects.