Shanshan Ma

Jul 21, 2023 | journals.plos.org | Shanshan Ma |Shandong Academy |Zihao Mi |Zhenzhen Wang

Cell state transition between cluster 1 and cluster 3As described previously, cluster 1 decreased significantly after 72 h of infection while cluster 3 emerged (Fig 6A). To investigate the potential cell state transition between clusters, we performed CytoTRACE analysis to evaluate the differentiation states and stemness of genes in SC subpopulations. CytoTRACE is a computational framework for predicting ordered differentiation states from scRNA-seq data.