
Joseph Devaney
Co-Host at Life in the Tax Lane (Canada)
CPA CA, VP Education and Development (Video Tax News)
Articles
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Apr 24, 2024 |
biorxiv.org | Xiao Chen |Daniel Baker |Egor Dolzhenko |Joseph Devaney
AbstractVariant calling is hindered in segmental duplications by sequence homology. We developed Paraphase, a HiFi-based informatics method that resolves highly similar genes by phasing all haplotypes of a gene family. We applied Paraphase to 160 long (>10 kb) segmental duplication regions across the human genome with high (>99%) sequence similarity, encoding 316 genes. Analysis across five ancestral populations revealed highly variable copy numbers of these regions.
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