Re-Emerging Diseases

3 weeks ago | bmcvetres.biomedcentral.com | Juan Carlos |Maria Teresa |Re-Emerging Diseases |Facultad de Veterinaria

Short-read sequencing samples through the Illumina MiSeq pipeline generated 6,189,306 sequencing reads after denoising, removing chimeras and filtering low-quality sequences. Reads were processed, yielding a total of 2,165 reads for taxonomic assignment. Finally, 221 taxa collapsed at genus level after processing the raw data. A total of 183 taxa were present among samples with a frequency greater than ten and a prevalence of 20% at the genus level.

Nov 23, 2023 | veterinaryresearch.biomedcentral.com | Re-Emerging Diseases

Animal experimentation was performed following proper veterinary practices, in accordance with European (Directive 2010/63/EU) and Spanish (Real Decreto 53/2013) regulation and with the approval of the Ethics Commission in Animal Experimentation of the Generalitat de Catalunya (Protocol Number 11150). Six pregnant sows were moved to IRTA-CReSA facilities 2 weeks pre-farrowing.

Oct 17, 2023 | porcinehealthmanagement.biomedcentral.com | Van Schaik |Re-Emerging Diseases |Facultat de Veterinària

The combination of search terms in the selected databases resulted in 1,940 studies (Fig. 1). In total, 651 non-duplicate citations were screened, and those that did not meet our previously defined screening criteria were excluded, leaving a total of 114 studies. After the final selection, 58 studies were deemed eligible for the purpose of this systematic review, including results from snowballing and JSHAP.

Oct 10, 2023 | virologyj.biomedcentral.com | Jose Luis |Universidad de Extremadura |Re-Emerging Diseases |Facultat de Veterinària

ReferencesZhang HH, Hu WQ, Li JY, Liu TN, Zhou JY, Opriessnig T, Xiao CT. Novel circovirus species identified in farmed pigs designated as porcine circovirus 4, Hunan province, China. Transbound Emerg Dis. 2020;67(3):1057–61. https://doi.org/10.1111/tbed.13446. Article  CAS  PubMed  Google Scholar  Hou CY, Zhang LH, Zhang YH, Cui JT, Zhao L, Zheng LL, Chen HY. Phylogenetic analysis of porcine circovirus 4 in Henan Province of China: a retrospective study from 2011 to 2021. Transbound Emerg Dis.

Aug 28, 2023 | bmcvetres.biomedcentral.com | Re-Emerging Diseases

At least 47,061,190 of the paired-end reads processed had a Phred score of 30, suggestive of high quality. The overall GC content was between 39.06 and 40.26. A total of 71,368 core genome SNPs were identified from all strains by kSNP3.