Zeyu Zheng

Nov 30, 2024 | onlinelibrary.wiley.com | Liqiang Hou |Zhimin Niu |Zeyu Zheng |Jin Zhang

Conflict of Interest Statement The authors declare no conflict of interest. Supporting Information Filename Description tpj17170-sup-0001-Figures.docxWord 2007 document , 15.5 MB Figures S1. K-mer (21-mer) based estimation of genome characters of I. serra. Figure S2. Gene Ontology biological process enrichment analysis and KEGG pathway enrichment analysis of all expanded genes in I. serra. Figure S3.

Feb 2, 2024 | nature.com | Zeyu Zheng |Jianquan Liu

AbstractMerging structural variations (SVs) at the population level presents a significant challenge, yet it is essential for conducting comprehensive genotypic analyses, especially in the era of pangenomics. Here, we introduce PanPop, a tool that utilizes an advanced sequence-aware SV merging algorithm to efficiently merge SVs of various types. We demonstrate that PanPop can merge and optimize the majority of multiallelic SVs into informative biallelic variants.