Zhirui Hu

May 17, 2024 | biorxiv.org | Zhirui Hu |Pawel F. Przytycki |Katherine S. Pollard

AbstractCellWalker2 is a graph diffusion-based method for single-cell genomics data integration. It extends the CellWalker model by incorporating hierarchical relationships between cell types, providing estimates of statistical significance, and adding data structures for analyzing multi-omics data so that gene expression and open chromatin can be jointly modeled.

Jan 11, 2024 | biorxiv.org | Yijia Jiang |Zhirui Hu |Allen W Lynch |Junchen Jiang

AbstractThe recent advances in single-cell epigenomic techniques have created a growing demand for scATAC-seq analysis. One key task is to determine cell types based on epigenetic profiling. We introduce scATAnno, a workflow designed to automatically annotate scATAC-seq data using large-scale scATAC-seq reference atlases.

Oct 19, 2023 | mdpi.com | Meilin He |Xuyang Teng |Zhirui Hu |Mingjue Zhu

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Jul 19, 2023 | arxiv.org | Zhirui Hu |Prasanna Date |Ang Li |Zhepeng Wang

arXiv:2307.09771 (quant-ph) Download a PDF of the paper titled A Novel Spatial-Temporal Variational Quantum Circuit to Enable Deep Learning on NISQ Devices, by Jinyang Li and 5 other authors Download PDF Submission history From: Jinyang Li [ view email] [v1] Wed, 19 Jul 2023 06:17:16 UTC (14,261 KB) Bibliographic Tools Bibliographic Explorer Toggle Bibliographic Explorer () Litmaps Toggle Litmaps (What is Litmaps?) scite.ai Toggle scite Smart Citations (What are Smart Citations?) Code, Data,...

Jun 15, 2023 | biorxiv.org | Yijia Jiang |Zhirui Hu |Junchen Jiang |Alexander Y. Zhu

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