David Ding

Jul 21, 2024 | medium.com | David Ding

As the Games of the XXXIII Olympiad, commonly known as the 2024 Paris Summer Olympics, are set to open to the world in the iconic French capital less than a week away, my excitement to watch my favorite sport, basketball, at the Games is definitely palpable.

Feb 21, 2024 | nature.com | David Ding |Nathan Rollins |Noam Prywes |David Savage |Michael T. Laub

AbstractRecent developments in protein design rely on large neural networks with up to 100s of millions of parameters, yet it is unclear which residue dependencies are critical for determining protein function. Here, we show that amino acid preferences at individual residues—without accounting for mutation interactions—explain much and sometimes virtually all of the combinatorial mutation effects across 8 datasets (R2 ~ 78-98%).

Jun 14, 2023 | biorxiv.org | David Ding |Ada Shaw |Nathan Rollins |Noam Prywes

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