Jianyi Yang

Dec 2, 2024 | nature.com | Yagoub Adam |Robert T. Batey |Eugene F. Baulin |Janusz M Bujnicki |Kristy A. Carpenter |Wah Chiu | +44 more

AbstractRNA-Puzzles is a collective endeavor dedicated to the advancement and improvement of RNA three-dimensional structure prediction. With agreement from structural biologists, RNA structures are predicted by modeling groups before publication of the experimental structures. We report a large-scale set of predictions by 18 groups for 23 RNA-Puzzles: 4 RNA elements, 2 Aptamers, 4 Viral elements, 5 Ribozymes and 8 Riboswitches.

Sep 5, 2024 | nature.com | Wei Liu |Ziye Wang |Yi Xiong |Jianyi Yang

Correction to: Nature Communications https://doi.org/10.1038/s41467-024-46808-5, published online 30 March 2024The original version of this article omitted an attribution to previous work by Kaminski et al., 2023. This has been added as reference (Ref.

Mar 30, 2024 | nature.com | Wei Liu |Ziye Wang |Yi Xiong |Jianyi Yang

AbstractHomologous protein search is one of the most commonly used methods for protein annotation and analysis. Compared to structure search, detecting distant evolutionary relationships from sequences alone remains challenging. Here we propose PLMSearch (Protein Language Model), a homologous protein search method with only sequences as input.

Jun 20, 2023 | arxiv.org | Jianyi Yang |Adam Wierman |Shaolei Ren

arXiv:2307.05494 (cs) Download a PDF of the paper titled Towards Environmentally Equitable AI via Geographical Load Balancing, by Pengfei Li and Jianyi Yang and Adam Wierman and Shaolei Ren Download PDF Submission history From: Shaolei Ren [ view email] [v1] Tue, 20 Jun 2023 17:13:33 UTC (258 KB) Bibliographic Tools Bibliographic Explorer Toggle Bibliographic Explorer () Litmaps Toggle Litmaps (What is Litmaps?) scite.ai Toggle scite Smart Citations (What are Smart Citations?) Code, Data,...