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Dec 5, 2024 | 
academic.oup.com | Shenzhen Branch |Guangdong Laboratory |Zhuo Liu
Accepted manuscripts are PDF versions of the author’s final manuscript, as accepted for publication by the journal but prior to copyediting or typesetting. They can be cited using the author(s), article title, journal title, year of online publication, and DOI. They will be replaced by the final typeset articles, which may therefore contain changes. The DOI will remain the same throughout.
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Nov 29, 2024 | 
onlinelibrary.wiley.com | Jinli Chen |Shenzhen Branch |Guangdong Laboratory |Dong Wang
Supporting Information Filename Description ins13476-sup-0001-SuppMat.docx1.7 MB Fig. S1 Cryo-EM mapping and AlphaFold-predicted structure of TcABCC-9C. Fig. S2 Docking analysis of avermectin and hexythiazox. Fig. S3 Reaction diagram of pyruvate-coupled ATPase assay. References , , , , , et al. (2024) Accurate structure prediction of biomolecular interactions with AlphaFold 3. Nature, 630, 493–500.
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Nov 22, 2024 | 
academic.oup.com | Shenzhen Branch |Guangdong Laboratory
Genome assembly errors can have a profound effect on downstream analyses. Collinearity-based Assembly Correction Tool (CATG) is designed to rectify these errors by leveraging collinearity information between the assembled genome and a reference genome. CATG provides a user-friendly interface for visualizing and manually correcting assembly errors. It supports various operations such as insertion, deletion, inversion, and swapping of contigs and chromosomes.
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Nov 11, 2024 | 
genomebiology.biomedcentral.com | Shenzhen Branch |Guangdong Laboratory
A total amount of 0.2 μg DNA of T cells per sample was used as input material for the DNA library preparations. Human PBMCs were provided by Milestone Biological Science & Technology (Shanghai, China). PBMCs were resuspended at 1 × 106 cells/mL in X-VIVOTM 15 Serum-free Hematopoietic Cell Medium (Lonza), supplemented with 10mM neutralized NAC (Sigma-Aldrich), and 10 ng/mL IL-7/IL-15. Briefly, the genomic DNA sample was fragmented by Covaris LE220R-plus (Covaris, USA) to a size of 350 bp.
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Aug 29, 2024 | 00321-0&sz=64)
cell.com | Shenzhen Branch |Guangdong Laboratory
Get full text accessLog in, subscribe or purchase for full access. References1. Smith, H.O. ∙ Hutchison, 3rd, C.A. ∙ Pfannkoch, C. ... Generating a synthetic genome by whole genome assembly: ϕX174 bacteriophage from synthetic oligonucleotidesProc. Natl. Acad. Sci. USA. 2003; 100:15440-154452. Cello, J. ∙ Paul, A.V. ∙ Wimmer, E. Chemical synthesis of poliovirus cDNA: generation of infectious virus in the absence of natural templateScience. 2002; 297:1016-10183.
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Aug 23, 2024 | 
onlinelibrary.wiley.com | Hongbing Liu |Shenzhen Branch |Guangdong Laboratory |Hang Zhao
INTRODUCTION The sedge species Eleocharis vivipara is highly regarded for its ornamental, ecological, and genetic research significance (Ueno, 2001; Baksh and Richards, 2006). This species exhibits distinct structural traits, such as its leafless habit with slender, linear, photosynthetic culms, setting it apart from other genera within the Cyperaceae and Poaceae families, and contributing to its ornamental appeal (Figure 1A). Ecologically, E.
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Aug 1, 2024 | 00925-4?rss=yes&sz=64)
cell.com | Shenzhen Branch |Guangdong Laboratory |College Dublin
Highlights•Integrative genomics investigates the polygenic basis of grapevine seedlessness•Comparative genomics identified SVs specific to seedless grapes•Introgression rather than convergent evolution driving evolution of seed abortion•Machine learning-based GS predicts grape seedlessness with ∼97% accuracySummarySeedlessness is a crucial quality trait in table grape (Vitis vinifera L.) breeding.
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Aug 1, 2024 | 00925-4&sz=64)
cell.com | Xu Wang |Shenzhen Branch |Guangdong Laboratory
Keywords viticulture grape breeding seedlessness seed abortion structural variations comparative genomics introgression convergent evolution genomic breeding genomic selection Introduction The production of seedless fruits leads to tremendous success in the global fruit market,1 such as bananas,2,3 citrus,4,5 watermelons,6 and table grapes.7 Seed abortion in table grape has been a major focus of breeding efforts for decades, as seedless grapes are highly preferred by consumers owing to...
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May 14, 2024 | 
veterinaryresearch.biomedcentral.com | Hubei Hongshan Laboratory |Huazhong Agricultural |Guangdong Laboratory |Shenzhen Branch
The bacterial strains, plasmids, and cell lines used in this study are described in Additional file 3. The GBS strain of HN016 was isolated in 2010 from diseased tilapia in Guangdong Province, China [21]. Strains of GBS were cultured in Todd–Hewitt broth (THB) (Hopebio, China) supplemented with 1.5% (wt/vol) agar at 28 °C. Escherichia coli strain DH5α (Trans, Beijing, China) was grown in Luria-Bertani broth (LB) (Hopebio, China) supplemented with 1.5% (wt/vol) agar at 37 °C.
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Apr 30, 2024 | 
academic.oup.com | Shandong Agricultural |Huazhong Agricultural |Shenzhen Branch
Over the past 10,000 years, tomato species have undergone both unintentional and intentional selection to enhance their favorable traits for human consumption and manufacturing. These selection processes have significantly influenced the genomes of tomato species and have played a critical role in improving tomato varieties.
