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Jan 11, 2025 | 
biorxiv.org | Yuhao Chen |Yan Zhang |Jiaqi Gan |Ke Ni
AbstractRNA velocities and generalizations emerge as powerful approaches for extracting time-resolved information from high-throughput snapshot single-cell data. Yet, several inherent limitations restrict applying the approaches to genes not suitable for RNA velocity inference due to complex transcriptional dynamics, low expression, or lacking splicing dynamics, or data of non-transcriptomic modality.
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Dec 7, 2024 | 
biorxiv.org | Yuhao Chen |Yan Zhang |Jiaqi Gan |Ke Ni
AbstractRNA velocities and generalizations emerge as powerful approaches for exacting dynamical information from high-throughput snapshot single-cell data. Several inherent limitations restrict applying the approaches to genes not suitable for RNA velocity inference due to complex transcriptional dynamics, low expression, or lacking splicing dynamics, and data of non-transcriptomic modality.
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Sep 28, 2024 | 
mdpi.com | Guang Liu |Yuhao Chen |Yang Cui |Lifang Shen
All articles published by MDPI are made immediately available worldwide under an open access license. No special permission is required to reuse all or part of the article published by MDPI, including figures and tables. For articles published under an open access Creative Common CC BY license, any part of the article may be reused without permission provided that the original article is clearly cited. For more information, please refer to https://www.mdpi.com/openaccess.
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Sep 27, 2024 | 
dev.to | Yuhao Chen
Isolation Level & Transaction AnomaliesIn relational databases, the isolation level of a transaction controls the visibility of data changes between transactions. Isolation levels define how one transaction is isolated from others in terms of read and write operations. By managing this isolation, you can prevent or allow certain types of transaction anomalies such as dirty reads, non-repeatable reads, and phantom reads.
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Sep 27, 2024 | 
dev.to | Yuhao Chen
INNER JOINLEFT JOIN (or LEFT OUTER JOIN)RIGHT JOIN (or RIGHT OUTER JOIN)FULL JOIN (or FULL OUTER JOIN)CROSS JOINAn INNER JOIN retrieves records that have matching values in both tables. If there is no match, the row will not be included in the result set. Example:Let’s say you have two tables: employees and departments.
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Sep 27, 2024 | 
dev.to | Yuhao Chen
Common Commandsgit init: Initialize a new Git repository. git config --global user.name "Your Name": Set your Git username. git config --global user.email "[email protected]": Set your Git email. git clone <repository_url>: Clone a repository from a remote server. git status: Check the status of your working directory. git add <file>: Stage changes for the next commit. git commit -m "Commit message": Commit staged changes. git push: Push committed changes to a remote repository.
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Aug 10, 2024 | 
mdpi.com | Yuhao Chen |Yalun Li |Juan Wang |Languang Lu
All articles published by MDPI are made immediately available worldwide under an open access license. No special permission is required to reuse all or part of the article published by MDPI, including figures and tables. For articles published under an open access Creative Common CC BY license, any part of the article may be reused without permission provided that the original article is clearly cited. For more information, please refer to https://www.mdpi.com/openaccess.
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Apr 30, 2024 | 
nature.com | Yuhao Chen |Zhen Yuan |Zhiyi Chen
Correction to: Nature Communications https://doi.org/10.1038/s41467-022-31932-x, published online 2 August 2022The original version of the manuscript contained errors in Figure 4 and in the Supplementary Information file. Original Figure 4 has now been replaced with the corrected version in the Article file (PDF and HTML versions) and the revised Supplementary Information file has been made available.
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Apr 24, 2024 | 
onlinelibrary.wiley.com | Yuhao Chen |Jiang Yan Xu |Yujie Chen |Luqi Wang
Conflict of interests The authors declare no conflict of interest. Supporting Information As a service to our authors and readers, this journal provides supporting information supplied by the authors. Such materials are peer reviewed and may be re-organized for online delivery, but are not copy-edited or typeset. Technical support issues arising from supporting information (other than missing files) should be addressed to the authors.
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Mar 13, 2024 | 
mdpi.com | Ming Wu |Xin Li |Yuhao Chen
All articles published by MDPI are made immediately available worldwide under an open access license. No specialpermission is required to reuse all or part of the article published by MDPI, including figures and tables. Forarticles published under an open access Creative Common CC BY license, any part of the article may be reused withoutpermission provided that the original article is clearly cited. For more information, please refer tohttps://www.mdpi.com/openaccess.
