Caroline Colijn

Dec 4, 2024 | journals.plos.org | Simon Fraser |Caroline Colijn |Arne Mooers |Niloufar Abhari

Loading metrics Open Access Peer-reviewedResearch Article ? This is an uncorrected proof. Citation: Abhari N, Colijn C, Mooers A, Tupper P (2024) Measuring genetic diversity across populations. PLoS Comput Biol 20(12): e1012651. https://doi.org/10.1371/journal.pcbi.1012651Editor: Philipp Martin Altrock, Max Planck Institute for Evolutionary Biology, GERMANYReceived: May 7, 2024; Accepted: November 18, 2024; Published: December 4, 2024Copyright: © 2024 Abhari et al.

Nov 3, 2024 | biorxiv.org | Yexuan Song |Caroline Colijn |Ailene MacPherson |Simon FRASER

AbstractCharacterizing the patterns and determinants of biological diversity is a central aim of evolutionary biology. Doing so requires developing expectations for clade size, the relationship between the number of species in a clade and its age, for standard diversification models, such as the coalescent or birth-death process.

Jul 15, 2024 | biorxiv.org | Caroline Colijn |Matthew Hall |Remco Bouckaert |Simon Fraser

AbstractWe introduce and apply Bayesian Reconstruction and Evolutionary Analysis of Transmission Histories (BREATH), a method to simultaneously construct phylogenetic trees and transmission trees using sequence data for a person-to-person outbreak. BREATH's transmission process that accounts for a flexible natural history of infection (including a latent period if desired) and a separate process for sampling.

Dec 28, 2023 | journals.plos.org | Nicola Mulberry |Simon Fraser |Caroline Colijn |Alexander R. Rutherford

Loading metrics Open Access Peer-reviewedResearch Article ? This is an uncorrected proof. Citation: Mulberry N, Rutherford AR, Colijn C (2023) Pneumococcal population dynamics: Investigating vaccine-induced changes through multiscale modelling. PLoS Comput Biol 19(12): e1011755.

Sep 29, 2023 | medrxiv.org | Sarah Otto |Ailene MacPherson |Caroline Colijn |Simon FRASER

The authors have declared no competing interest. Funding was provided by the Natural Sciences and Engineering Research Council of Canada to SPO (RGPIN- 2022-03726), to AM (RGPIN-2022-03113), and to CC (CANMOD; RGPIN-2019-06624), by the Canada Research Chairs Program (SPO and AM) and the Canada 150 Research Chair Program (CC), and by the Canadian Institutes for Health Research (CIHR) operating grant to CoVaRR-Net.