Louise M Judd

Oct 10, 2024 | elifesciences.org | Michael Hall |Ryan Wick |Louise M Judd |An Nguyen |an nguyễn

eLife assessment This important study shows how a combination of the latest generation of Oxford Nanopore Technology long reads with state-of-the art variant callers enables bacterial variant discovery at an accuracy that matches or exceeds the current "gold standard" with short reads. The work thus heralds a new era, in which Illumina short-read sequencing no longer rules supreme.

Jun 4, 2024 | microbiologyresearch.org | George Bouras |Louise M Judd |Robert Edwards |Sarah Vreugde

Article metrics loading... /content/journal/mgen/10.1099/mgen.0.001254Download as PowerPoint /deliver/fulltext/mgen/10/6/mgen001254.html?itemId=/content/journal/mgen/10.1099/mgen.0.001254&mimeType=html&fmt=ahah References Delahaye C, Nicolas J. Sequencing DNA with nanopores: troubles and biases. PLoS One 2021; 16:e0257521 [View Article] [PubMed][Google Scholar] Lerminiaux N, Fakharuddin K, Mulvey MR, Mataseje L.

Apr 17, 2024 | microbiologyresearch.org | Jack Pilgrim |Ryan Wick |Louise M Judd |Kelly L. Wyres

Article metrics loading... /content/journal/mgen/10.1099/mgen.0.001242Download as PowerPoint /deliver/fulltext/mgen/10/4/mgen001242.html?itemId=/content/journal/mgen/10.1099/mgen.0.001242&mimeType=html&fmt=ahah References Ferrari J, Vavre F. Bacterial symbionts in insects or the story of communities affecting communities. Philos Trans R Soc Lond B Biol Sci 2011; 366:1389–1400 [View Article] [PubMed][Google Scholar] Engelstädter J, Hurst GDD.

Mar 10, 2024 | biorxiv.org | George Bouras |Louise M Judd |Robert Edwards |Sarah Vreugde

AbstractIt is now possible to assemble near-perfect bacterial genomes using Oxford Nanopore Technologies (ONT) long reads, but short-read polishing is still required for perfection. However, the effect of short-read depth on polishing performance is not well understood. Here, we introduce Pypolca (with default and careful parameters) and Polypolish v0.6.0 (with a new careful parameter).

Feb 9, 2023 | microbiologyresearch.org | Ryan Wick |Louise M Judd |Kelly L. Wyres |Claire Gorrie

1 - 3 of3for"Margaret M. C. Lam" PublicationKeywordKlebsiella pneumoniae(3) AMR(1) ICEKp(1) K locus(1) Klebsiella capsule K-locus genomic surveillance(1) MLST(1) Nanopore sequencing(1) O locus(1) bacterial pathogens(1) basecalling(1) benchmarking(1) colibactin(1) genomic surveillance(1) mobile genetic elements(1) phylogenetic clustering(1) serotyping(1) virulence(1) yersiniabactin(1) Show moreShow lessContent typeAccess Type